Source code for pyinterp.histogram2d

# Copyright (c) 2022 CNES
# All rights reserved. Use of this source code is governed by a
# BSD-style license that can be found in the LICENSE file.
Histogram 2D
from typing import Optional, Union
import copy

import dask.array as da
import numpy as np

from . import core

[docs]class Histogram2D: """Group a number of more or less continuous values into a smaller number of "bins" located on a grid. This class will build for each pixel of the defined grid, a histogram. This histogram will be used to compute the statistics. Histogram used uses the algorithm described in the paper `A Streaming Parallel Decision Tree Algorithm`. Therefore, if the number of observations to be taken into account in a pixel exceeds the maximum number of bins, the calculated statistics will be an approximate value of the exact statistical variable. This algorithm is useful if you want to know the statistical distribution per pixel or the value of a quantile, like the median. Otherwise, use the :py:class:`pyinterp.Binning2D` class. Args: x: Definition of the bin centers for the X axis of the grid. y: Definition of the bin centers for the Y axis of the grid. bin_counts: The number of bins to use. If not set, the number of bins is 100. dtype: Data type of the instance to create. .. note :: The axes define the centers of the different cells where the statistics will be calculated, as shown in the figure below. .. figure:: ../pictures/coordinates.svg :align: center :width: 50% In this example, to calculate the statistics in the different cells defined, the coordinates of the axes must be shifted by half a grid step, 0.5 in this example. .. note :: Yael Ben-Haim and Elad Tom-Tov, A Streaming Parallel Decision Tree Algorithm, Journal of Machine Learning Research, 11, 28, 849-872 """ def __init__(self, x: core.Axis, y: core.Axis, bin_counts: Optional[int] = None, dtype: Optional[np.dtype] = np.dtype("float64")): if dtype == np.dtype("float64"): self._instance = core.Histogram2DFloat64(x, y, bin_counts) elif dtype == np.dtype("float32"): self._instance = core.Histogram2DFloat32(x, y, bin_counts) else: raise ValueError(f"dtype {dtype} not handled by the object") self.dtype = dtype @property def x(self) -> core.Axis: """Gets the bin centers for the X Axis of the grid.""" return self._instance.x @property def y(self) -> core.Axis: """Gets the bin centers for the Y Axis of the grid.""" return self._instance.y
[docs] def clear(self) -> None: """Clears the data inside each bin.""" self._instance.clear()
[docs] def __repr__(self) -> str: """Called by the ``repr()`` built-in function to compute the string representation of this instance.""" result = [f"<{self.__class__.__module__}.{self.__class__.__name__}>"] result.append("Axis:") result.append(f" x: {self._instance.x}") result.append(f" y: {self._instance.y}") return "\n".join(result)
[docs] def __add__(self, other: "Histogram2D") -> "Histogram2D": """Overrides the default behavior of the ``+`` operator.""" if self.dtype != other.dtype: raise ValueError("dtype mismatch") result = copy.copy(self) result._instance += other._instance # type: ignore return result
[docs] def push(self, x: np.ndarray, y: np.ndarray, z: np.ndarray) -> None: """Push new samples into the defined bins. Args: x: X coordinates of the samples. y: Y coordinates of the samples. z: New samples to push into the defined bins. """ x = np.asarray(x).ravel() y = np.asarray(y).ravel() z = np.asarray(z).ravel() self._instance.push(x, y, z)
[docs] def push_delayed(self, x: Union[np.ndarray, da.Array], y: Union[np.ndarray, da.Array], z: Union[np.ndarray, da.Array]) -> da.Array: """Push new samples into the defined bins from dask array. Args: x: X coordinates of the samples. y: Y coordinates of the samples. z: New samples to push into the defined bins. Returns: The calculation graph producing the update of the grid from the provided samples. Running the graph will return an instance of this class containing the statistics calculated for all processed samples. .. seealso :: :py:meth:`push <pyinterp.Histogram2D.push>` """ x = da.asarray(x) y = da.asarray(y) z = da.asarray(z) def _process_block(x, y, z, x_axis, y_axis, dtype): hist2d = Histogram2D(x_axis, y_axis, dtype=dtype) hist2d.push(x, y, z) return np.array([hist2d], dtype="object") return da.map_blocks(_process_block, x.ravel(), y.ravel(), z.ravel(), self.x, self.y, self.dtype, dtype="object").sum()
[docs] def variable(self, statistics: str = 'mean', *args) -> np.ndarray: """Gets the regular grid containing the calculated statistics. Args: statistics: The statistics to compute The following statistics are available: * ``count`` : compute the count of points within each bin. * ``kurtosis`` : compute the kurtosis of values for points within each bin. * ``max`` : compute the maximum of values for point within each bin. * ``mean`` : compute the mean of values for points within each bin. * ``min`` : compute the minimum of values for points within each bin. * ``skewness`` : compute the skewness of values for points * ``variance`` : compute the variance within each bin. args: Additional arguments to pass to the statistics function. For example, ``quantile`` requires a ``q`` argument that specifies the quantile to compute. Returns: The dataset representing the calculated statistical variable. """ try: return getattr(self._instance, statistics)(*args) except AttributeError as exc: raise ValueError( f"The statistical variable {statistics} is unknown.") from exc